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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3090420_3090535_R

Intron Information:

Intron Rank:
138241
Intron Class:
major
Intron Phase:
Intron Coordinates:
3090420 - 3090535
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TCCCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
CAGCCCTGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
77.3
0.61
0.7
71.8
26.5
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
43.4
-0.4
2
55.38
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021908
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032240
3090178 - 3094034
3857