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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3100742_3101658_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3100742 - 3101658
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CCGTGCTTATCT
Flanking Amino Acid:
CPGINVKCVKFNDQLISPKH
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
72.3
0.5
1
65.7
40.4
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
49.9
0.07
2.1
66.94
49.6

Associated Gene:

Gene:
GMEB1
Ensembl Gene ID:
ENSAPLG00000002955
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003001
3099151 - 3106971
7821