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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3103576_3104255_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3103576 - 3104255
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
CTCCCCGTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TGCCTGTTGACT
Flanking Amino Acid:
GMKKDTDEISEDTLMFWKGI
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
40.1
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
64.2
0.32
1
56.8
38.7
Minor 5ss
44.7
-0.6
2.8
52.1
44.7
Minor BPS
49
0
2.1
68.74
42.3

Associated Gene:

Gene:
GMEB1
Ensembl Gene ID:
ENSAPLG00000002955
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003001
3099151 - 3106971
7821