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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3104394_3105304_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3104394 - 3105304
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACATTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGGCACTCATCC
Flanking Amino Acid:
RLGQSPFQMTDAAVLNNVAH
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
76.9
0.6
0.9
70.1
35.6
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
44.6
-0.4
1.9
54.38
42.8

Associated Gene:

Gene:
GMEB1
Ensembl Gene ID:
ENSAPLG00000002955
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003001
3099151 - 3106971
7821