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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3109977_3110606_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3109977 - 3110606
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
AGCTCTGTAACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
74.8
0.56
0.8
66.2
35.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
50.7
-0.1
2.1
57.97
44

Associated Gene:

Gene:
YTHDF2
Ensembl Gene ID:
ENSAPLG00000020468
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047308
3109952 - 3124596
14645