About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3113115_3114758_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3113115 - 3114758
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTCGTCCTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
72
0.55
1
71.8
31.4
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
51
0.01
1.8
61.98
43.8

Associated Gene:

Gene:
YTHDF2
Ensembl Gene ID:
ENSAPLG00000020468
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027549
3112745 - 3126279
13535