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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3145235_3145319_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3145235 - 3145319
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAGGCGAC
5'SS Class:
major
3'SS Sequence:
TCTCCGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GGGTCCTCACCT
Flanking Amino Acid:
RKKSKNNIQWMGTGIFEDTA
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
59.7
39.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.9
0.49
0.8
65.4
30.4
Minor 5ss
37.7
-1.4
3.7
53.3
44.6
Minor BPS
53.2
0.18
1.9
70
46.3

Associated Gene:

Gene:
E2F2
Ensembl Gene ID:
ENSAPLG00000021411
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037363
3144507 - 3146552
2046