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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3145479_3145692_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
3145479 - 3145692
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
GAG|ATATCCTTA
5'SS Class:
strong_minor
3'SS Sequence:
CCTCCCTGCCCAC|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTCCTATACC
Flanking Amino Acid:
RQLTDHEDNQRLAYVTYQDL
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
38
-0.7
3.5
58.5
43.1
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
39.5
-0.6
3.1
52.8
36.7
Minor 5ss
89.6
1.32
1.2
91.2
27.8
Minor BPS
67.3
0.53
2
82.88
37.2

Associated Gene:

Gene:
E2F2
Ensembl Gene ID:
ENSAPLG00000021411
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037363
3144507 - 3146552
2046