Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3168977_3170379_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3168977 - 3170379

Intron Length:

1403

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGCGG

5'SS Class:

major

3'SS Sequence:

CTCCCCGCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTCCAG

U12 Branch Point Sequence:

AGCTCCTCCAGG

Flanking Amino Acid:

LDKMVARKSTEGALDLLKSL

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

1.1

55.6

48.6

Major BPS

41.5

-0.5

1.6

49.7

Major PPT

67.7

0.4

0.8

61.5

Minor 5ss

30.6

-2.2

3.3

39.4

45.9

Minor BPS

42.7

-0.7

2.2

46.49

46.1

Associated Gene:

Gene:

TCEA3

Ensembl Gene ID:

ENSAPLG00000025037

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038450

3168152 - 3174620

6469

ENSAPLT00000044949

3168152 - 3174620

6469

ENSAPLT00000026915

3168152 - 3174620

6469

ENSAPLT00000041827

3168152 - 3174240

6089

ENSAPLT00000041574

3168152 - 3174620

6469