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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3170893_3171508_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3170893 - 3171508
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
GCTGCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
TGGTCCCCAAAT
Flanking Amino Acid:
PDKHKEKHKERRDSADSRSS
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56.6
42.5
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
68.9
0.43
0.9
61.7
34.9
Minor 5ss
29
-2.4
3.7
40.8
45.9
Minor BPS
49.5
0.04
2
71.68
44.3

Associated Gene:

Gene:
TCEA3
Ensembl Gene ID:
ENSAPLG00000025037
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038450
3168152 - 3174620
6469