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Intron Name: Anas_platyrhynchos_platyrhynchos_24_3172080_3173081_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3172080 - 3173081

Intron Length:

1002

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGCAAC

5'SS Class:

major

3'SS Sequence:

GATGGGCCCCCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTTGAT

U12 Branch Point Sequence:

GTTTCCTTGATG

Flanking Amino Acid:

EMLTAALRMDDIFQELKSTD

Intron Amino Acid Position:

501

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

0.9

70.2

35.9

Major BPS

71.5

0.53

1.1

43.2

Major PPT

0.14

43.4

43.1

Minor 5ss

34.4

-1.8

2.9

39.8

40.4

Minor BPS

76.6

0.69

1.2

75.4

36.6

Associated Gene:

Gene:

TCEA3

Ensembl Gene ID:

ENSAPLG00000025037

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041827

3168152 - 3174240

6089