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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3173752_3173864_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3173752 - 3173864
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCCCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
ATCCTCTGACCC
Flanking Amino Acid:
CKKKNCTYNQVQTRSADEPM
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
72.7
0.51
0.8
69.1
31.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
48.2
-0.1
1.7
58.6
40.2

Associated Gene:

Gene:
TCEA3
Ensembl Gene ID:
ENSAPLG00000025037
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041827
3168152 - 3174240
6089
ENSAPLT00000041574
3168152 - 3174620
6469
ENSAPLT00000038450
3168152 - 3174620
6469
ENSAPLT00000026915
3168152 - 3174620
6469
ENSAPLT00000044949
3168152 - 3174620
6469