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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3192839_3197460_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3192839 - 3197460
Intron Length:
4622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TCTGCCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAG
U12 Branch Point Sequence:
CCCCCTGTAAGC
Flanking Amino Acid:
GNVLVMYGIVRYTKMKTATN
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57.1
42.2
Major BPS
49.2
-0
1.6
59
44.6
Major PPT
69.5
0.44
0.9
62.7
33
Minor 5ss
31.7
-2.1
3.3
39.7
45.8
Minor BPS
42
-0.6
2.2
46.37
43.5

Associated Gene:

Gene:
OPRD1
Ensembl Gene ID:
ENSAPLG00000002972
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003017
3192446 - 3198989
6544