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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3218641_3219073_R

Intron Information:

Intron Rank:
151968
Intron Class:
major
Intron Phase:
Intron Coordinates:
3218641 - 3219073
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGTTATTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.8
34.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
34
-1.8
3.4
49.1
41.3
Minor BPS
61.5
0.22
1.5
63.48
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029322
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046374
3217349 - 3219595
2247