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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3222060_3222447_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3222060 - 3222447
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGACCA
5'SS Class:
major
3'SS Sequence:
ACTTGGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
EVHEESKQFTRYHRP*
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.7
38.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.6
0.46
0.9
66.3
40.2
Minor 5ss
27.3
-2.6
2.9
32.6
41.5
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
PHACTR4
Ensembl Gene ID:
ENSAPLG00000019553
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021044
3222044 - 3280246
58203
ENSAPLT00000002571
3221759 - 3274739
52981
ENSAPLT00000039886
3220593 - 3241719
21127
ENSAPLT00000037398
3220593 - 3258553
37961
ENSAPLT00000036137
3220593 - 3280246
59654