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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3223345_3224062_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3223345 - 3224062
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TTCTTGCATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TGTTCTTGCATT
Flanking Amino Acid:
REIKRRLTRKLSQRPTVAEL
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
79.7
0.67
0.9
77.6
35.8
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
55.1
0.24
1.9
77.3
39.6

Associated Gene:

Gene:
PHACTR4
Ensembl Gene ID:
ENSAPLG00000019553
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021044
3222044 - 3280246
58203
ENSAPLT00000002571
3221759 - 3274739
52981
ENSAPLT00000039886
3220593 - 3241719
21127
ENSAPLT00000037398
3220593 - 3258553
37961
ENSAPLT00000036137
3220593 - 3280246
59654