About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3224125_3224911_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3224125 - 3224911
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCCCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
EELEQRNILQPKNEADRQAE
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.5
32.9
Major BPS
54
0.1
1
59.7
32.6
Major PPT
79.7
0.67
0.9
76.8
31.7
Minor 5ss
32
-2.1
2.7
35.9
33.5
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
PHACTR4
Ensembl Gene ID:
ENSAPLG00000019553
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002571
3221759 - 3274739
52981
ENSAPLT00000039886
3220593 - 3241719
21127
ENSAPLT00000037398
3220593 - 3258553
37961
ENSAPLT00000036137
3220593 - 3280246
59654
ENSAPLT00000021044
3222044 - 3280246
58203