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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3227554_3230085_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3227554 - 3230085
Intron Length:
2532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTAAC
U12 Branch Point Sequence:
ACCCCGTTAACT
Flanking Amino Acid:
PVNRNSNSVLAELSQAMNSG
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
62.1
0.3
1.2
65
38.7
Major PPT
85.3
0.8
0.8
76.7
37.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
55.6
0.25
2.1
71.5
45.3

Associated Gene:

Gene:
PHACTR4
Ensembl Gene ID:
ENSAPLG00000019553
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021044
3222044 - 3280246
58203
ENSAPLT00000002571
3221759 - 3274739
52981
ENSAPLT00000039886
3220593 - 3241719
21127
ENSAPLT00000037398
3220593 - 3258553
37961
ENSAPLT00000036137
3220593 - 3280246
59654