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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3230739_3234265_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3230739 - 3234265
Intron Length:
3527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CGGCCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTCTCTTGTTT
Flanking Amino Acid:
SSDKFKETSEDGEDPEKLNP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
69.5
0.44
0.9
61.5
34.9
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
46.1
-0.2
3.4
79.75
36.6

Associated Gene:

Gene:
PHACTR4
Ensembl Gene ID:
ENSAPLG00000019553
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021044
3222044 - 3280246
58203