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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3233808_3234265_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3233808 - 3234265
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATTATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCCCGATTT
Flanking Amino Acid:
SSDKFKETSEVLERKISMRK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74
0.54
1
72
42
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
54.1
0.21
2
81.84
39.6

Associated Gene:

Gene:
PHACTR4
Ensembl Gene ID:
ENSAPLG00000019553
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036137
3220593 - 3280246
59654
ENSAPLT00000002571
3221759 - 3274739
52981
ENSAPLT00000039886
3220593 - 3241719
21127
ENSAPLT00000037398
3220593 - 3258553
37961