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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3234443_3241673_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3234443 - 3241673
Intron Length:
7231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
AGGTAAAAAATC
Flanking Amino Acid:
FSRPVSPAAFAEEVDHPPSD
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
29.9
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
78.7
0.65
0.9
73.5
31.4
Minor 5ss
32.4
-2
2.8
43.1
43.9
Minor BPS
37.7
-0.9
2
44.82
36.7

Associated Gene:

Gene:
PHACTR4
Ensembl Gene ID:
ENSAPLG00000019553
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039886
3220593 - 3241719
21127