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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3250297_3252485_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3250297 - 3252485
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCGGATTTT
5'SS Class:
major
3'SS Sequence:
CCTTCCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAT
U12 Branch Point Sequence:
TGTGCAGCGATT
Flanking Amino Acid:
FSPRPRETSVQRSLEFNPK*
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.2
63
41.2
Major BPS
48.9
-0
1.3
58
39.1
Major PPT
78.1
0.63
0.7
72.6
25.5
Minor 5ss
28.5
-2.5
4.3
45
45.5
Minor BPS
39.7
-0.7
2.3
61
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022334
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032871
3250267 - 3256666
6400