Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3252625_3252709_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3252625 - 3252709

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATTAAGA

5'SS Class:

major

3'SS Sequence:

AGTGAACGTGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAGTGAA

U12 Branch Point Sequence:

TCGCTGTGAAGT

Flanking Amino Acid:

LCDGAEQFYSWHCGSVSRAP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.1

0.36

1.1

58.9

39.6

Major BPS

64.3

0.35

1.2

55.4

Major PPT

44.2

-0.3

1.7

40.4

43.3

Minor 5ss

39.1

-1.2

2.8

46.6

43.5

Minor BPS

41.4

-0.5

2.3

57.19

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022334

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032871

3250267 - 3256666

6400