About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3258554_3274565_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3258554 - 3274565
Intron Length:
16012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAGC
5'SS Class:
major
3'SS Sequence:
CCTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGTCTCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.9
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.9
0.79
0.8
79.6
32.3
Minor 5ss
27
-2.6
3
34.1
41.6
Minor BPS
66.1
0.58
1.6
83.48
38.1

Associated Gene:

Gene:
PHACTR4
Ensembl Gene ID:
ENSAPLG00000019553
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002571
3221759 - 3274739
52981