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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3320718_3321365_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3320718 - 3321365
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGATTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCTCTCTGATT
Flanking Amino Acid:
KFDAISANGDSVPSSPEMLC
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
100
1.24
0.5
100
0
Major PPT
75.7
0.58
0.9
72.7
36.5
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
54.9
0.23
1.7
70.95
41

Associated Gene:

Gene:
FAM76A
Ensembl Gene ID:
ENSAPLG00000004037
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039412
3312249 - 3324825
12577