About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3335402_3335563_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3335402 - 3335563
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CTTCCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AACGTTTTAATT
Flanking Amino Acid:
ANGVYEEPRCGNETSELDHA
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.8
0.63
0.7
69.1
31.4
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
57.9
0.33
1.3
66.17
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026834
3335031 - 3345458
10428
ENSAPLT00000021945
3335031 - 3345458
10428
ENSAPLT00000017234
3335031 - 3345458
10428