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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3335754_3335841_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3335754 - 3335841
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAC
U12 Branch Point Sequence:
CTCTCCAGGACC
Flanking Amino Acid:
TESYGPYLGQNGYCHCNQSE
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
57.2
0.18
1.4
63.1
44.5
Major PPT
69
0.43
0.9
59.3
37.5
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
49.8
-0
1.8
63.53
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017234
3335031 - 3345458
10428
ENSAPLT00000031481
3335031 - 3345458
10428
ENSAPLT00000026834
3335031 - 3345458
10428
ENSAPLT00000021945
3335031 - 3345458
10428
ENSAPLT00000021056
3335031 - 3345458
10428