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Intron Name: Anas_platyrhynchos_platyrhynchos_24_3340336_3340877_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3340336 - 3340877

Intron Length:

542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGTG

5'SS Class:

strong_major

3'SS Sequence:

CGGGGTGCCGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

CCCTGCTGACGC

Flanking Amino Acid:

TESYGSYKGQNGLCHYNQSE

Intron Amino Acid Position:

566

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

38.2

Major BPS

66.3

0.4

1.1

41.8

Major PPT

54.5

0.1

45.8

41.4

Minor 5ss

27.4

-2.6

3.5

36.8

47.7

Minor BPS

-0.9

2.2

41.78

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036543

3339597 - 3345458

5862

ENSAPLT00000030245

3339597 - 3345458

5862