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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3342064_3342144_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3342064 - 3342144
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
AATTGCACCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
CGTCCCCTAATT
Flanking Amino Acid:
PSSVFDIPVNETKKCGLLPG
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
54.4
44.7
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
59.3
0.21
0.9
49.2
39.5
Minor 5ss
30.8
-2.2
3.3
38.2
46.7
Minor BPS
59.9
0.39
1.7
75.17
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021056
3335031 - 3345458
10428
ENSAPLT00000031481
3335031 - 3345458
10428
ENSAPLT00000017234
3335031 - 3345458
10428
ENSAPLT00000030245
3339597 - 3345458
5862
ENSAPLT00000026834
3335031 - 3345458
10428
ENSAPLT00000021945
3335031 - 3345458
10428
ENSAPLT00000036543
3339597 - 3345458
5862