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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3343205_3343450_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3343205 - 3343450
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
GGGTGCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
CGGGGCTGAGCC
Flanking Amino Acid:
PHFGSIYHVRGVINLPYAEI
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
62.4
0.28
1
54.3
41.4
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
39.7
-0.8
2
43.46
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026834
3335031 - 3345458
10428
ENSAPLT00000021945
3335031 - 3345458
10428
ENSAPLT00000021056
3335031 - 3345458
10428
ENSAPLT00000036543
3339597 - 3345458
5862
ENSAPLT00000031481
3335031 - 3345458
10428