About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3343511_3344179_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3343511 - 3344179
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TCGTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAA
U12 Branch Point Sequence:
GGCCCCACAACC
Flanking Amino Acid:
VASALCAAVRGRDQGLSRPL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
62.3
43.9
Major BPS
47.4
-0.1
1
52.5
32.6
Major PPT
76.4
0.59
0.9
69.4
36.8
Minor 5ss
28.7
-2.4
2.7
25.5
36.2
Minor BPS
46.8
-0.2
1.8
55.35
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022698
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026834
3335031 - 3345458
10428
ENSAPLT00000021945
3335031 - 3345458
10428
ENSAPLT00000036543
3339597 - 3345458
5862
ENSAPLT00000021056
3335031 - 3345458
10428
ENSAPLT00000031481
3335031 - 3345458
10428
ENSAPLT00000030245
3339597 - 3345458
5862