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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3443330_3443848_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3443330 - 3443848
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAG
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTCTTCACTT
Flanking Amino Acid:
VTQLDPKEEEVSLQGINSRK
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
65.9
39.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
85.2
0.79
0.7
79.4
26.2
Minor 5ss
28.6
-2.4
3.5
37.4
47.3
Minor BPS
56.5
0.28
1.8
76.63
40.5

Associated Gene:

Gene:
WASF2
Ensembl Gene ID:
ENSAPLG00000010236
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010683
3439154 - 3451061
11908