About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3444003_3445121_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
3444003 - 3445121

Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAACACTG

5'SS Class:
major

3'SS Sequence:
TTCCCTGTTCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCCC

U12 Branch Point Sequence:
TTTCCCTTCCCT

Flanking Amino Acid:
PPPLNILSPYRDDGKEALKF

Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.2
0.62
1.2
66.4
45.1

Major BPS
35.6
-0.9
4.2
77.4
37.4

Major PPT
76.3
0.59
0.8
68.9
37.1

Minor 5ss
41.1
-1
3.2
56.5
47.6

Minor BPS
46.8
-0.1
3.6
85.35
41

Associated Gene:

Gene:
WASF2

Ensembl Gene ID:

Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3439154 - 3451061
11908