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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3482294_3482384_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3482294 - 3482384
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCATC
5'SS Class:
major
3'SS Sequence:
GTGCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
GTGGCCTCAGCA
Flanking Amino Acid:
IKIFMEEVPGGSLSSLLCSK
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.2
39.5
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
67.7
0.4
0.9
58.1
38.4
Minor 5ss
37.1
-1.5
3.3
50.7
46.2
Minor BPS
48.6
-0.1
1.9
60.46
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015805
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016475
3481629 - 3485012
3384