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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3482522_3482728_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3482522 - 3482728
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCACACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATGTATTT
Flanking Amino Acid:
DNHIVHRDIKGDNVLINTYS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
68.1
0.41
0.9
60.2
35.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
47.7
-0
2.3
76.23
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015805
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016475
3481629 - 3485012
3384