Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3484289_3485008_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3484289 - 3485008

Intron Length:

720

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CTGCCCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCGGGAC

U12 Branch Point Sequence:

GGTGTCGGGACG

Flanking Amino Acid:

CGVPSSASRQW*

Intron Amino Acid Position:

492

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

72.9

31.3

Major BPS

43.6

-0.4

1.4

36.7

42.3

Major PPT

76.1

0.59

0.8

69.2

31.3

Minor 5ss

27.7

-2.6

29.3

Minor BPS

39.9

-0.9

2.1

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015805

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016475

3481629 - 3485012

3384