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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3499057_3500003_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3499057 - 3500003
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TTTTTTTCCATC
Flanking Amino Acid:
FFSLLYGKYVSVGGFVKTWL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
82.6
0.73
0.8
76.7
31.5
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
50.2
-0
1.9
69.41
36.9

Associated Gene:

Gene:
TMEM222
Ensembl Gene ID:
ENSAPLG00000021290
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030384
3495963 - 3503688
7726