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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3500391_3501071_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3500391 - 3501071
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCGTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGATCAC
U12 Branch Point Sequence:
GATCACGGAAGG
Flanking Amino Acid:
EDNMAFGKPVKYWKLDPGKV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
48.2
-0.1
1.3
51.4
43.9
Major PPT
80
0.67
0.8
72.1
37.9
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
36.7
-1.1
2.3
41.11
42.3

Associated Gene:

Gene:
TMEM222
Ensembl Gene ID:
ENSAPLG00000021290
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030384
3495963 - 3503688
7726