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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3511686_3511743_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3511686 - 3511743
Intron Length:
58

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTTG
5'SS Class:
major
3'SS Sequence:
GGTGGGGCTGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTACAG
U12 Branch Point Sequence:
GATTACAGGACT
Flanking Amino Acid:
QRRMNADPLEAQTTKTAQRG
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
68.4
38.9
Major BPS
50
0
1.5
66.8
39.9
Major PPT
44
-0.3
1.7
38.8
44.6
Minor 5ss
35
-1.7
3.4
46.5
48.8
Minor BPS
47
-0.1
2
68.38
41.5

Associated Gene:

Gene:
WDTC1
Ensembl Gene ID:
ENSAPLG00000015930
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016647
3511245 - 3528427
17183