Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3513351_3516393_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3513351 - 3516393

Intron Length:

3043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

CCCTTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAT

U12 Branch Point Sequence:

GACTATCTAATC

Flanking Amino Acid:

NRAAAYMKRKWDGDHYDALR

Intron Amino Acid Position:

422

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

79.7

35.3

Major BPS

85.7

0.89

0.8

22.2

Major PPT

83.6

0.76

0.7

32.6

Minor 5ss

35.2

-1.7

2.7

39.3

40.3

Minor BPS

46.7

-0.2

1.8

53.89

37.8

Associated Gene:

Gene:

WDTC1

Ensembl Gene ID:

ENSAPLG00000015930

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039151

3511633 - 3541687

30055

ENSAPLT00000016647

3511245 - 3528427

17183