Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3516568_3517758_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3516568 - 3517758

Intron Length:

1191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTGA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCCCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTTAG

U12 Branch Point Sequence:

AGACATTTAGCT

Flanking Amino Acid:

FRLSEGRAHVSPQVELPPYL

Intron Amino Acid Position:

364

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.93

0.9

75.7

36.7

Major BPS

52.4

0.06

1.5

42.8

Major PPT

86.8

0.83

0.7

81.5

23.5

Minor 5ss

36.1

-1.6

3.3

47.1

48.3

Minor BPS

47.9

-0

1.7

63.08

40.4

Associated Gene:

Gene:

WDTC1

Ensembl Gene ID:

ENSAPLG00000015930

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039151

3511633 - 3541687

30055

ENSAPLT00000016647

3511245 - 3528427

17183