Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3526097_3528294_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3526097 - 3528294

Intron Length:

2198

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAT

U12 Branch Point Sequence:

CTTTGCTTCATG

Flanking Amino Acid:

TRDIIHRQIKERGALGFERH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

77.9

36.9

Major BPS

69.6

0.49

1.3

73.6

41.8

Major PPT

78.6

0.64

0.9

35.7

Minor 5ss

42.4

-0.8

3.1

57.3

47.4

Minor BPS

49.7

-0.1

2.3

62.41

46.2

Associated Gene:

Gene:

WDTC1

Ensembl Gene ID:

ENSAPLG00000015930

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039151

3511633 - 3541687

30055

ENSAPLT00000016647

3511245 - 3528427

17183