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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3528428_3540498_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3528428 - 3540498
Intron Length:
12071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCATGTTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCCCTCTCATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.5
0.55
0.9
69.1
36.8
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
42.7
-0.4
2
56.56
46.1

Associated Gene:

Gene:
WDTC1
Ensembl Gene ID:
ENSAPLG00000015930
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039151
3511633 - 3541687
30055