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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_35503_49888_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35503 - 49888
Intron Length:
14386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTAATGATT
Flanking Amino Acid:
VWLGFHQSIQDSHDALLEFG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
0.9
73.4
36.7
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
48.5
-0
1.8
74.43
35.9

Associated Gene:

Gene:
RLF
Ensembl Gene ID:
ENSAPLG00000011786
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012274
23045 - 74585
51541