Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_355469_357612_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

355469 - 357612

Intron Length:

2144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTGG

5'SS Class:

strong_major

3'SS Sequence:

AATTTTTATATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTCTTCTAATT

Flanking Amino Acid:

HFEDRGAAVKAMNEMNGKEI

Intron Amino Acid Position:

418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

69.7

43.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.1

0.56

0.9

70.3

39.6

Minor 5ss

38.2

-1.3

3.1

49.2

47.1

Minor BPS

61.7

0.44

1.6

81.49

Associated Gene:

Gene:

HNRNPR

Ensembl Gene ID:

ENSAPLG00000003755

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003871

353900 - 382318

28419