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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3568248_3568582_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3568248 - 3568582
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
CCCGCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
ATCTGCTCACCT
Flanking Amino Acid:
LLFCLIARVLGVLVLTWFIN
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
66.7
0.38
0.8
57
33.4
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
47.7
-0
2.2
70.25
46.6

Associated Gene:

Gene:
SLC9A1
Ensembl Gene ID:
ENSAPLG00000016147
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016880
3544977 - 3574364
29388