About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_357763_358439_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
357763 - 358439
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTATGCACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCCTATGC
Flanking Amino Acid:
EEPDPEVMAKVKVLFVRNLA
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58.3
0.19
0.9
50.9
37.8
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
53.5
0.09
2.2
75.04
41.5

Associated Gene:

Gene:
HNRNPR
Ensembl Gene ID:
ENSAPLG00000003755
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003871
353900 - 382318
28419