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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3582633_3586032_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3582633 - 3586032
Intron Length:
3400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGCTTCTCACCA
Flanking Amino Acid:
LSVRPRTIVQVVRSRLEKKG
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.6
0.8
0.7
84.3
23.5
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
50.6
0.02
1.8
63.67
42.8

Associated Gene:

Gene:
TENT5B
Ensembl Gene ID:
ENSAPLG00000001361
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001351
3582420 - 3588365
5946
ENSAPLT00000039514
3582420 - 3588052
5633