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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_359857_361607_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
359857 - 361607
Intron Length:
1751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGCAAGTGAATG
Flanking Amino Acid:
KDAAQEAVKLCDNYEIRPGK
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
88.2
0.86
0.6
87.5
22.7
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
39.5
-0.9
2.2
42.72
42.3

Associated Gene:

Gene:
HNRNPR
Ensembl Gene ID:
ENSAPLG00000003755
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003871
353900 - 382318
28419