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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3607477_3610565_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3607477 - 3610565
Intron Length:
3089

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCCCGGCCC
5'SS Class:
major
3'SS Sequence:
CACCGGCACCGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCAGCAC
U12 Branch Point Sequence:
CTCCCCGGCACC
Flanking Amino Acid:
GGRGGPGAAAGGGSGELAAA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.1
0.29
1.3
56.7
38.7
Major BPS
41.5
-0.5
1.3
43
37.8
Major PPT
42.7
-0.4
1.6
34.7
34.9
Minor 5ss
15.6
-4
3.6
17.1
28.3
Minor BPS
40.7
-0.7
2.4
52.11
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025590
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039148
3607110 - 3610867
3758